BIOSCI 347 : Environmental Microbiology and Biotechnology


2020 Semester Two (1205) (15 POINTS)

Course Prescription

The ecology and physiology of micro-organisms in natural and engineered environments. Key themes include marine microbiology, the importance of microbial symbioses to life on Earth, and contemporary research methods in microbiology. Processes such as wastewater treatment and the production of bioactives are used to emphasise exploitation of microbial metabolism for environmental biotechnology purposes.

Course Overview

This course explores key themes in environmental microbiology, from developing a fundamental understanding of microorganisms in the environment through to exploiting their activities for human gain (i.e. environmental biotechnology).  In many cases this involves microbes that are resistant to “classic” cultivation on a simple agar plate, so there is a major emphasis within the course on cutting-edge methods to better understand these enigmatic organisms.  The course is well-suited to any student with an interest in microbiology, but should also appeal to those with an ecological background.  With a mix of theoretical and applied aspects of microbial ecology, and a weekend-long laboratory component designed to emulate “real-life research”, the course could serve as an entry point into further (postgraduate) study or jobs in diverse fields including biosecurity, biotechnology, ecosystem monitoring and medical microbiology.  A remote version of the course will be provided to those students located overseas.

Course Requirements

Prerequisite: BIOSCI 204 or MEDSCI 202

Capabilities Developed in this Course

Capability 1: Disciplinary Knowledge and Practice
Capability 2: Critical Thinking
Capability 3: Solution Seeking
Capability 4: Communication and Engagement
Capability 5: Independence and Integrity
Capability 6: Social and Environmental Responsibilities
Graduate Profile: Bachelor of Science

Learning Outcomes

By the end of this course, students will be able to:
  1. Explain the importance of microorganisms within natural and engineered environments. (Capability 1 and 6)
  2. Describe the strengths and limitations of contemporary techniques within microbial ecology, and when to use each approach. (Capability 1 and 3)
  3. Describe the various ways, both positive and negative, in which microorganisms interact with each other, as well as with plant and animal (including human) “hosts”. (Capability 1)
  4. Explain using specific examples, how microbial metabolisms can be exploited for environmental biotechnology purposes. (Capability 1)
  5. Apply basic culturing and molecular biology techniques in the study of environmental microorganisms. (Capability 1, 4 and 5)
  6. Critically evaluate and summarise the published literature relating to environmental microbiology and biotechnology. (Capability 2 and 4)


Assessment Type Percentage Classification
Essay 10% Individual Coursework
Laboratories 25% Individual Coursework
Test 15% Individual Test
Final Exam 50% Individual Examination
Assessment Type Learning Outcome Addressed
1 2 3 4 5 6
Final Exam

Learning Resources

There is no prescribed textbook for this course, as developments in environmental microbiology and biotechnology have been so rapid in recent years that no single textbook satisfactorily encompasses all the relevant areas.  The references suggested during the course are therefore a combination of journal articles (including recent reviews wherever possible) and book chapters.  Parts of Willey et al. (2017), the prescribed textbook for BIOSCI 204, may be useful.
Willey JM, Sherwood LM, and Woolverton CJ (2017) Prescott, Harley, and Klein’s Microbiology. 10th Edition, McGraw-Hill, New York.

Special Requirements

Students must have a lab coat for the practical component of this course.

Workload Expectations

This course is a standard 15 point course and students are expected to spend 10 hours per week involved in each 15 point course that they are enrolled in.

For this course, you can expect 32 hours of lectures, 18 hours of laboratories, 3 hours of tutorials, 40 hours of reading and thinking about the content and 40 hours of work on assignments and/or test preparation.

Digital Resources

Course materials are made available in a learning and collaboration tool called Canvas which also includes reading lists and lecture recordings (where available).

Please remember that the recording of any class on a personal device requires the permission of the instructor.


The content and delivery of content in this course are protected by copyright. Material belonging to others may have been used in this course and copied by and solely for the educational purposes of the University under license.

You may copy the course content for the purposes of private study or research, but you may not upload onto any third party site, make a further copy or sell, alter or further reproduce or distribute any part of the course content to another person.

Academic Integrity

The University of Auckland will not tolerate cheating, or assisting others to cheat, and views cheating in coursework as a serious academic offence. The work that a student submits for grading must be the student's own work, reflecting their learning. Where work from other sources is used, it must be properly acknowledged and referenced. This requirement also applies to sources on the internet. A student's assessed work may be reviewed against online source material using computerised detection mechanisms.

Inclusive Learning

All students are asked to discuss any impairment related requirements privately, face to face and/or in written form with the course coordinator, lecturer or tutor.

Student Disability Services also provides support for students with a wide range of impairments, both visible and invisible, to succeed and excel at the University. For more information and contact details, please visit the Student Disability Services’ website at

Special Circumstances

If your ability to complete assessed coursework is affected by illness or other personal circumstances outside of your control, contact a member of teaching staff as soon as possible before the assessment is due.

If your personal circumstances significantly affect your performance, or preparation, for an exam or eligible written test, refer to the University’s aegrotat or compassionate consideration page:

This should be done as soon as possible and no later than seven days after the affected test or exam date.

Student Feedback

During the course Class Representatives in each class can take feedback to the staff responsible for the course and staff-student consultative committees.

At the end of the course students will be invited to give feedback on the course and teaching through a tool called SET or Qualtrics. The lecturers and course co-ordinators will consider all feedback.

Your feedback helps to improve the course and its delivery for all students.

Student Charter and Responsibilities

The Student Charter assumes and acknowledges that students are active participants in the learning process and that they have responsibilities to the institution and the international community of scholars. The University expects that students will act at all times in a way that demonstrates respect for the rights of other students and staff so that the learning environment is both safe and productive. For further information visit Student Charter (


Elements of this outline may be subject to change. The latest information about the course will be available for enrolled students in Canvas.

In this course you may be asked to submit your coursework assessments digitally. The University reserves the right to conduct scheduled tests and examinations for this course online or through the use of computers or other electronic devices. Where tests or examinations are conducted online remote invigilation arrangements may be used. The final decision on the completion mode for a test or examination, and remote invigilation arrangements where applicable, will be advised to students at least 10 days prior to the scheduled date of the assessment, or in the case of an examination when the examination timetable is published.

Published on 06/07/2020 01:33 p.m.